---
name: "gthfilestat"
section: "1"
platform: "linux"
package: "genomethreader"
version: "1.7.3+dfsg-10+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gthfilestat"
---

# gthfilestat(1)

show statistics about consensus spliced alignments

## NAME

gthfilestat - show statistics about consensus spliced alignments

## SYNOPSIS

**gthfilestat** \[option ...\] \[file ...\]

## DESCRIPTION

Show statistics about spliced alignments in GenomeThreader output files containing intermediate results.

## OPTIONS

- **-minalignmentscore**

  set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00

- **-maxalignmentscore**

  set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00

- **-mincoverage**

  set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00

- **-maxcoverage**

  set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99

- **-v**

  be verbose default: no

- **-help**

  display help and exit

- **-version**

  display version information and exit