NAME
gthfilestat - show statistics about consensus spliced alignments
SYNOPSIS
gthfilestat [option ...] [file ...]
DESCRIPTION
Show statistics about spliced alignments in GenomeThreader output files containing intermediate results.
OPTIONS
- -minalignmentscore
-
set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00
- -maxalignmentscore
-
set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00
- -mincoverage
-
set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00
- -maxcoverage
-
set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99
- -v
-
be verbose default: no
- -help
-
display help and exit
- -version
-
display version information and exit