---
name: "gthbssmbuild"
section: "1"
platform: "linux"
package: "genomethreader"
version: "1.7.3+dfsg-10+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gthbssmbuild"
---

# gthbssmbuild(1)

build splice site model

## NAME

gthbssmbuild - build splice site model

## SYNOPSIS

**gthbssmbuild** \[option ...\] genomic\_file cDNA\_file

## DESCRIPTION

Build a BSSM file from a directory tree containing the training data.

## OPTIONS

- **-bssmfile**

  specify name of BSSM file to store parameters in default: undefined

- **-datapath**

  specify root of species-specific training data directory tree default: undefined

- **-gtdonor**

  train GT donor model default: no

- **-gcdonor**

  train GC donor model default: no

- **-agacceptor**

  train AG acceptor model default: no

- **-gzip**

  use gzip’ed input files default: no

- **-help**

  display help and exit

- **-version**

  display version information and exit