---
name: "gt-readjoiner"
section: "1"
platform: "linux"
package: "genometools"
version: "1.6.5+ds-2.2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gt-readjoiner"
---

# gt-readjoiner(1)

Readjoiner: a string graph-based sequence assembler.

## NAME

gt-readjoiner - Readjoiner: a string graph-based sequence assembler.

## SYNOPSIS

**gt readjoiner** \[option ...\] tool \[argument ...\]

## DESCRIPTION

- **-help**

  display help and exit

- **-version**

  display version information and exit

Please consult the Readjoiner manual for more information.

Tools:

• **prefilter** prepare the readset for Readjoiner

• **overlap** calculate suffix-prefix matches

• **assembly** construct string graph and output contigs

## REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.