---
name: "gt-matstat"
section: "1"
platform: "linux"
package: "genometools"
version: "1.6.5+ds-2.2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gt-matstat"
---

# gt-matstat(1)

Compute matching statistics.

## NAME

gt-matstat - Compute matching statistics.

## SYNOPSIS

**gt matstat** \[options ...\] -query queryfile \[...\]

## DESCRIPTION

- **-fmi** \[*string*\]

  specify fmindex (default: undefined)

- **-esa** \[*string*\]

  specify suffix array (default: undefined)

- **-pck** \[*string*\]

  specify packed index (default: undefined)

- **-query**

  specify queryfiles

- **-min** \[*value*\]

  only output length if \>= given minimum length (default: 0)

- **-max** \[*value*\]

  only output length if ⇐ given maximum length (default: 0)

- **-output**

  set output flags (sequence, querypos, subjectpos)

- **-help**

  display help and exit

- **-version**

  display version information and exit

## ADDITIONAL INFORMATION

For detailed information, please refer to the manual of matstat.

## REPORTING BUGS

Report bugs to \<kurtz@zbh.uni-hamburg.de\>.