---
name: "gt-ltrclustering"
section: "1"
platform: "linux"
package: "genometools"
version: "1.6.5+ds-2.2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gt-ltrclustering"
---

# gt-ltrclustering(1)

Cluster features of LTRs.

## NAME

gt-ltrclustering - Cluster features of LTRs.

## SYNOPSIS

**gt ltrclustering** \[option ...\] indexname \[GFF3\_file ...\]

## DESCRIPTION

- **-psmall** \[*value*\]

  specify how many percent of the smaller sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

- **-plarge** \[*value*\]

  specify how many percent of the larger sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

- **-o** \[*filename*\]

  redirect output to specified file (default: undefined)

- **-gzip** \[*yes\|no*\]

  write gzip compressed output file (default: no)

- **-bzip2** \[*yes\|no*\]

  write bzip2 compressed output file (default: no)

- **-force** \[*yes\|no*\]

  force writing to output file (default: no)

- **-help**

  display help and exit

- **-version**

  display version information and exit

## REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.