---
name: "gt-congruence-spacedseed"
section: "1"
platform: "linux"
package: "genometools"
version: "1.6.5+ds-2.2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gt-congruence-spacedseed"
---

# gt-congruence-spacedseed(1)

Match spaced seeds.

## NAME

gt-congruence-spacedseed - Match spaced seeds.

## SYNOPSIS

**gt congruence spacedseed** \[options\]

## DESCRIPTION

- **-esa** \[*string*\]

  Specify index (enhanced suffix array) (default: undefined)

- **-pck** \[*string*\]

  Specify index (packed index) (default: undefined)

- **-q**

  Specify files containing the query sequences

- **-v** \[*yes\|no*\]

  be verbose (default: no)

- **-help**

  display help and exit

- **-version**

  display version information and exit

## REPORTING BUGS

Report bugs to \<kurtz@zbh.uni-hamburg.de\>.