NAME
gsort - sort genomic data
SYNOPSIS
gsort [--chromosomemappings CHROMOSOMEMAPPINGS] [--memory MEMORY] [--parent] PATH GENOME
DESCRIPTION
Positional arguments:
- PATH
-
a tab-delimited file to sort
- GENOME
-
a genome file of chromosome sizes and order
OPTIONS
- --chromosomemappings CHROMOSOMEMAPPINGS, -c CHROMOSOMEMAPPINGS
-
a file used to re-map chromosome names for example from hg19 to GRCh37
- --memory MEMORY, -m MEMORY
-
megabytes of memory to use before writing to temp files. [default: 2800]
- --parent, -p
-
for gff only. given rows with same chrom and start put those with a 'Parent' attribute first
- --help, -h
-
display this help and exit
AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.