---
name: "gmt-music-bmr"
section: "1p"
platform: "linux"
package: "libgenome-model-tools-music-perl"
version: "0.04-4"
release: "Debian 10 (Buster)"
platforms: ["linux"]
url: "https://new.carta.tech/gmt-music-bmr"
---

# gmt-music-bmr(1p)

Calculate gene coverages and background mutation rates.

## gmt music bmr

## NAME

gmt music bmr - Calculate gene coverages and background mutation rates.

## VERSION

This document describes gmt music bmr version 0.04 (2018-07-05 at 09:17:13)

## SYNOPSIS

gmt music bmr ...

## DESCRIPTION

These tools are part of the MuSiC suite.

## SUB-COMMANDS

### GENERAL

- **calc-bmr**

  - Calculates mutation rates given per-gene coverage (from "music bmr calc-covg"), and a mutation list

    - **calc-covg**

  - Uses calcRoiCovg.c to count covered bases per-gene for each given tumor-normal pair of BAMs.

    - **calc-covg-helper**

  - Uses calcRoiCovg.c to count covered bases per-gene for a tumor-normal pair of BAMs.

    - **calc-wig-covg**

  - Count covered bases per-gene for each given wiggle track format file.

    ## LICENSE

Copyright (C) 2010-2011 Washington University in St. Louis.

It is released under the Lesser GNU Public License (LGPL) version 3.  See the  associated LICENSE file in this distribution.

## AUTHORS

```
 Cyriac Kandoth, Ph.D.
```

## SEE ALSO

**genome-music-bmr-calc-covg**(1), **genome-music-bmr-calc-bmr**(1), **genome-music**(1), [**genome**(1)](/genome/1.md)