---
name: "gmod_fasta2gff3.pl"
section: "1p"
platform: "linux"
package: "chado-utils"
version: "1.31-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gmod_fasta2gff3.pl"
---

# gmod\_fasta2gff3.pl(1p)

Convert FASTA to simple GFF3

## NAME

$O - Convert FASTA to simple GFF3

## SYNOPSYS

```
  % $O [options]
```

## COMMAND-LINE OPTIONS

```
  --fasta_dir           Directory contain fasta files
                           (default: ./fasta)
  --gfffilename         Name of GFF3 file to be created
                           (default: ./out.gff)
  --type                SO type to assign to each feature
                           (default: EST)
  --source              Text to appear in source column
                           (default: .)
  --attributes          Additional tag=value pairs to appear in column 9
  --nosequence          Suppress the ##FASTA section (ie, don't
                           print DNA sequences)
```

## DESCRIPTION

This script simply takes a collection of fasta files and converts them to simple GFF3 suitable for loading into chado.

## AUTHORS

Scott Cain \<cain@cshl.org\>

Copyright (c) 2006

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.