---
name: "gm2segs"
section: "1"
platform: "linux"
package: "ncbi-entrez-direct"
version: "24.0.20250523+dfsg-1+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gm2segs"
---

# gm2segs(1)

present GeneMachine BLAST aligments in tabular form

## NAME

gm2segs - present GeneMachine BLAST aligments in tabular form

## SYNOPSIS

**gm2segs** \[**-0-based**\|**-zero-based**\|**-1-based**\|**-one-based**\|**-ucsc-based**\]

## DESCRIPTION

**gm2segs** reads BLAST alignments from GeneMachine from standard input and writes a sorted table of their hits' coordinates to standard output.

## OPTIONS

- **-0-based**\|**-zero-based**

  Report closed intervals in zero-based coordinates.

- **-1-based**\|**-one-based**

  Report closed intervals in one-based coordinates (default).

- **-ucsc-based**

  Report half-open intervals in zero-based coordinates.

## SEE ALSO

[**xtract**(1)](/xtract/1.md).