---
name: "glistquery"
section: "1"
platform: "linux"
package: "genometester"
version: "4.0+git20200511.91cecb5+dfsg-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/glistquery"
---

# glistquery(1)

print the frequencies of k-mers in a list file

## NAME

glistquery - print the frequencies of k-mers in a list file

## SYNOPSIS

**glistquery** *\<INPUTLIST\>* \[*OPTIONS*\]

## OPTIONS

**-v**, **--version**             - print version information and exit

**-h**, **--help**                - print this usage screen and exit

**-stat**                     - print statistics of the list file and exit

**-median**                   - print min/max/median/average and exit

**-q**, **--query**               - single query word

**-f**, **--queryfile**           - list of query words in a file

**-s**, **--seqfile**             - FastA/FastQ file

**-l**, **--listfile**            - list file made by glistmaker

**-mm**, **--mismatch** NUMBER    - specify number of mismatches (default 0, can be used with **-d** and **-dd**)

**-p**, **--perfectmatch** NUMBER - specify number of 3' perfect matches (default 0)

**-min**, **--minfreq** NUMBER    - minimum frequency of the printed words (default 0)

**-max**, **--maxfreq** NUMBER    - maximum frequency of the printed words (default MAX\_UINT)

**-all**                      - in case of mismatches prints all found words

**-D**                        - increase debug level

## EXAMPLES

 You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md

## SEE ALSO

 [**glistmaker**(1)](/glistmaker/1.md), [**glistcompare**(1)](/glistcompare/1.md), [**gmer\_caller**(1)](/gmer_caller/1.md), [**gmer\_counter**(1)](/gmer_counter/1.md)