NAME
gffutils-cli_parents - Fetch parents from the database according to ID
DESCRIPTION
usage: gffutils-cli parents [-h] [-l LIMIT] [--exclude EXCLUDE]
- [--exclude-self]
-
db [ids]
Fetch parents from the database according to ID.
positional arguments:
- db
-
Database to use. If a GFF or GTF file is provided instead for this argument, a database will be created for you. This can take some time (several minutes), so it's best to create one ahead of time.
- ids
-
Comma-separated list of IDs. These IDs, along with their parents, will be returned (subject to --limit and --exclude). If none provided, use all exons in the database (default: -)
options:
- -h, --help
-
show this help message and exit
- -l, --limit LIMIT
-
Feature type (string), or level (integer). No parents below this level will be returned (default: -)
- --exclude EXCLUDE
-
Comma-separated list of featuretypes to filter out (like grep -v) (default: -)
- --exclude-self
-
Use this to suppress reporting the IDs you've provided. (default: False)