NAME
gffutils-cli_create - Create a database
DESCRIPTION
usage: gffutils-cli create [-h] [-o OUTPUT] [-f] [-q] [-m MERGE]
- [--disable-infer-genes]
-
[--disable-infer-transcripts] filename
Create a database.
positional arguments:
- filename
-
GFF or GTF file to use
options:
- -h, --help
-
show this help message and exit
- -o, --output OUTPUT
-
Database to create. Default is to append ".db" to the end of the input filename (default: -)
- -f, --force
-
Overwrite an existing database (default: False)
- -q, --quiet
-
Suppress the reporting of timing information when creating the database (default: False)
- -m, --merge MERGE
-
Merge strategy to be used if if duplicate IDs are found. (default: 'merge')
- --disable-infer-genes
-
Disable inferring of gene extents for GTF files. Use this if your GTF file already has "gene" featuretypes (default: False)
- --disable-infer-transcripts
-
Disable inferring of transcript extents for GTF files. Use this if your GTF file already has "transcript" featuretypes (default: False)