---
name: "gff2sga.pl"
section: "1"
platform: "linux"
package: "chip-seq"
version: "1.5.5-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gff2sga.pl"
---

# gff2sga.pl(1)

convert gff to sga

## NAME

gff2sga.pl - convert gff to sga

## DESCRIPTION

-

  gff2sga.pl \[options\] \<GFF file\>

-

  where options are:

- **-h**\|--help

  Show this stuff

- **--db** \<path\>

  Use \<path\> to locate Chrom Id Storable File 'chro\_idx.nstorage'

- **-f**\|--feature \<feature\>

  Set Feature name \<feature\>

- **-s**\|--species \<species\>

  Assembly \<species\> (i.e hg18)

- **-c**

  Generate a Centered SGA file

- **-u**

  Generate an Unoriented SGA file

- **-x**

  Generate an extended SGA file with the 6th field equal to the GFF 'feature' field, and the feature field equal to the GFF 'source'

## AUTHOR

 This manpage was written by Andreas Tille for the Debian distribution and\
  can be used for any other usage of the program.