NAME
gfadiff - compare two GFA files
SYNOPSIS
gfadiff [-h] [-s] [-l] [-c] [-p] [-i] [-script] <gfa1> <gfa2>
DESCRIPTION
If a combination of -h,-s,-l,-c and/or -p is specified, then only record of the specified type [h=headers, s=segments, l=links, c=containments, p=paths] are compared. (default: -h -s -l -c -p)
OTHER OPTIONS
- -i
-
output message if identical
- -script
-
create Ruby script to transform gfa1 into gfa2
SEE ALSO
rgfa-simdebruijn(1), rgfa-findcrispr(1), rgfa-mergelinear(1)
BUGS
Please report bugs to the RGFA issue tracker: <https://github.com/ggonnella/rgfa/issues>