NAME
getVariance - estimates variance of MCMC samples
SYNOPSIS
getVariance -o <outFileName> [OPTIONS] [sampleFiles]
DESCRIPTION
Estimates variance of MCMC samples from 1 or multiple replicates.
-
[sample Files] should contain transposed MCMC samples from replicates.
OPTIONS
--help
-
Show this help information.
-l , --log
-
Use logged values. (default: Off)
--norm=<normalization>
-
Normalization constants for each input file provided as comma separated list of doubles (e.g. 1.0017,1.0,0.9999 ).
-o <outFileName> , --outFile=<outFileName>
-
Name of the output file.
-t <type> , --type=<type>
-
Type of variance, possible values: [sample,sqDif] for sample variance or squared difference. (default: sample)
-v , --verbose
-
Verbose output. (default: Off)