NAME
getCounts.py - generate read counts for each input file
SYNOPSIS
getCounts.py [options] [<inputFile.thetaMeans>]+
DESCRIPTION
-
This program reads supplied .thetaMeans files and using either information from .prob files or Nmap option generates read counts for each input file provided.
OPTIONS
- -h, --help
-
show this help message and exit
- -o OUT, --outFile=OUT
-
Output file
- -v, --verbose
-
Verbose output
- -p PROBDIR, --probDir=PROBDIR
-
Directory with .prob files. The program will look in here for files with same name except fot extension .prob in order to find out total-aligned-read counts for each experiment.
- -n NMAP, --Nmap=NMAP
-
Comma separated list of total aligned-read-counts for each experiment.