NAME
genbank_get_genomes_by_taxon.py - genbank get genomes by taxon
DESCRIPTION
usage: genbank_get_genomes_by_taxon.py [-h] -o OUTDIRNAME [-t TAXON] [-v] [-f]
- [--noclobber] [-l LOGFILE]
-
[--format FORMAT] --email EMAIL [--retries RETRIES] [--batchsize BATCHSIZE] [--timeout TIMEOUT]
optional arguments:
- -h, --help
-
show this help message and exit
- -o OUTDIRNAME, --outdir OUTDIRNAME
-
Output directory (required)
- -t TAXON, --taxon TAXON
-
NCBI taxonomy ID
- -v, --verbose
-
Give verbose output
- -f, --force
-
Force file overwriting
- --noclobber
-
Don't nuke existing files
- -l LOGFILE, --logfile LOGFILE
-
Logfile location
- --format FORMAT
-
Output file format [gbk|fasta]
- --email EMAIL
-
Email associated with NCBI queries (required)
- --retries RETRIES
-
Number of Entrez retry attempts per request.
- --batchsize BATCHSIZE
-
Entrez record return batch size
- --timeout TIMEOUT
-
Timeout for URL connection (s)
AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.