---
name: "gbrowse_syn_load_alignment_database"
section: "1"
platform: "linux"
package: "gbrowse"
version: "2.56+dfsg-12"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/gbrowse_syn_load_alignment_database"
---

# gbrowse\_syn\_load\_alignment\_database(1)

Script to load the database for gbrowse\_syn

## NAME

gbrowse\_syn\_load\_alignment\_database - Script to load the database for gbrowse\_syn

## DESCRIPTION

 The expected file format is tab-delimited (shown below):\
  species1  ref1  start1 end1 strand1  cigar\_string1 species2  ref2  start2 end2 strand2  cigar\_string2 coords1... \| coords2...\
  the coordinate format: pos1\_species1 pos1\_species2 ... posn\_species1 posn\_species2 \| pos1\_species2 pos1\_species1 ... posn\_species2 posn\_species1,\
  where pos is the matching sequence coordinate (ungapped) in each species.

## AUTHOR

Olivier Sallou (olivier.sallou (at) irisa.fr) - Man page and packaging Lincoln Stein - GBrowse