fps2sga.pl1
Convert fps to sga
Overview
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fps2sga.pl [options] <FPS file>
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where options are:
-h|--help-
Show this stuff
-f|--feature <feature>-
Set Feature name <feature>
-s|--species <species>-
Assembly <species> (i.e hg18)
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-x -
Generate an extended SGA file with the 6th field equal to the FPS 'description' field
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--ignore0flag -
Ignore 0 flag at position 29 of the FP line, so keep orientation the same as original