NAME
forge - training program for SNAP
SYNOPSIS
forge [options] <ann> <dna> [options]
OPTIONS
-help
-verbose
- -pseudocount <float>
-
[1] (absolute number for all models)
-pseudoCoding <float> [0.0] (eg. 0.05)
-pseudoIntron <float> [0.0]
- -pseudoInter <float>
-
[0.0]
- -min-counts
-
[0]
-lcmask [-fragmentN]
- -utr5-length <int>
-
[50]
- -utr5-offset <int>
-
[10]
- -utr3-length <int>
-
[50]
- -utr3-offset <int>
-
[10]
- -explicit <int>
-
[250]
- -min-intron <int>
-
[30]
- -boost <file>
-
(file of ID <int>)