---
name: "fetch_all_refseq_bacterial_genomes"
section: "1"
platform: "linux"
package: "cct"
version: "1:1.0.3-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/fetch_all_refseq_bacterial_genomes"
---

# fetch\_all\_refseq\_bacterial\_genomes(1)

visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

## NAME

fetch\_all\_refseq\_bacterial\_genomes - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

## DESCRIPTION

### USAGE:

-

  fetch\_all\_refseq\_bacterial\_genomes **-o** DIR

### DESCRIPTION:

-

  Downloads all bacterial RefSeq sequences form NCBI in GenBank format. The **--min** and **--max** options can be used to restrict the size of the returned sequences.

### REQUIRED ARGUMENTS:

**-o**, **--output** DIR

-

  The output directory to contain the downloaded GenBank files.

### OPTIONAL ARGUMENTS:

**-m**, **--min** INTEGER

-

  Records with a sequence length shorter than this value will be ignored.

**-x**, **--max** INTEGER

-

  Records with a sequence length longer than this value will be ignored.

**-h**, **--help**

-

  Show this message.

### EXAMPLE:

-

  fetch\_all\_refseq\_bacterial\_genomes **-o** my\_project/comparison\_genomes

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.