NAME
fastq_to_fasta - Convert FASTQ files to FASTA files
DESCRIPTION
usage: fastq_to_fasta [-h] [-r] [-n] [-v] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon ([email protected])
- [-h]
-
= This helpful help screen.
- [-r]
-
= Rename sequence identifiers to numbers.
- [-n]
-
= keep sequences with unknown (N) nucleotides.
-
Default is to discard such sequences.
- [-v]
-
= Verbose - report number of sequences.
- If [-o] is specified,
-
report will be printed to STDOUT.
-
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.
- [-z]
-
= Compress output with GZIP.
- [-i INFILE]
-
= FASTA/Q input file. default is STDIN.
-
[-o OUTFILE] = FASTA output file. default is STDOUT.
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
-
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.