NAME
fastq_quality_trimmer - Filters sequences based on quality
DESCRIPTION
usage: fastq_quality_trimmer [-h] [-v] [-t N] [-l N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.13.1 by A. Gordon ([email protected])
- [-h]
-
= This helpful help screen.
- [-t N]
-
= Quality threshold - nucleotides with lower
-
quality will be trimmed (from the end of the sequence).
- [-l N]
-
= Minimum length - sequences shorter than this (after trimming)
-
will be discarded. Default = 0 = no minimum length.
- [-z]
-
= Compress output with GZIP.
- [-i INFILE]
-
= FASTQ input file. default is STDIN.
-
[-o OUTFILE] = FASTQ output file. default is STDOUT. [-v] = Verbose - report number of sequences.
- If [-o] is specified,
-
report will be printed to STDOUT.
-
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
-
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.