NAME
fastq_quality_filter - Filters sequences based on quality
DESCRIPTION
usage: fastq_quality_filter [-h] [-v] [-q N] [-p N] [-z] [-i INFILE] [-o OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon ([email protected])
- [-h]
-
= This helpful help screen.
- [-q N]
-
= Minimum quality score to keep.
- [-p N]
-
= Minimum percent of bases that must have [-q] quality.
- [-z]
-
= Compress output with GZIP.
- [-i INFILE]
-
= FASTA/Q input file. default is STDIN.
-
[-o OUTFILE] = FASTA/Q output file. default is STDOUT. [-v] = Verbose - report number of sequences.
- If [-o] is specified,
-
report will be printed to STDOUT.
-
If [-o] is not specified (and output goes to STDOUT), report will be printed to STDERR.
- [-Q N]
-
= FASTQ ASCII offset. Default is 33.
SEE ALSO
The quality of this automatically generated manpage might be insufficient. It is suggested to visit
-
http://hannonlab.cshl.edu/fastx_toolkit/commandline.html
to get a better layout as well as an overview about connected FASTX tools.