NAME
fastq-clipper - ea-utils: removes one or more adapter sequences from the fastq file
DESCRIPTION
usage: fastq-clipper [options] <fastq-file> <adapters>
Removes one or more adapter sequences from the fastq file. Adapter sequences are colon-delimited. Stats go to stderr, unless -o is specified.
OPTIONS
- -h
-
This help
- -o FIL
-
Output file (stats to stdout)
- -p N
-
Maximum difference percentage (10)
- -m N
-
Minimum clip length (1)
- -l N
-
Minimum remaining sequence length (15)
- -x [N]
-
Extra match length past adapter length,
-
N =-1 : search all N = 0 : search only up to adapter length
- -e
-
End-of-line (default)
- -b
-
Beginning-of-line (not supported yet)