NAME
fastaq_to_random_subset
DESCRIPTION
fastaq_to_random_subset [options] <fasta/q in> <outfile> <probablilty of keeping read (pair) in [0,100]>
Takes a random subset of reads from a fasta/q file and optionally the corresponding read from a mates file. Ouptut is interleaved if mates file given
positional arguments:
- infile
-
Name of input fasta/q file
- outfile
-
Name of fasta/q output file
- INT
-
Probability of keeping any given read (pair) in [0,100]
optional arguments:
- -h, --help
-
show this help message and exit
- --mate_file MATE_FILE
-
Name of fasta/q mates file
AUTHOR
fastaq_to_random_subset was originally written by Martin Hunt ([email protected])
COPYING
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.