NAME
fastaq_to_fasta
DESCRIPTION
fastaq_to_fasta <infile> <outfile>
Converts sequence file to FASTA format
positional arguments:
- infile
-
Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip
- outfile
-
Name of output file
optional arguments:
- -h, --help
-
show this help message and exit
- -l LINE_LENGTH, --line_length LINE_LENGTH
-
Number of bases on each sequence line of output file [60]
- -s, --strip_after_whitespace
-
Remove everything after first whitesapce in every sequence name
AUTHOR
fastaq_to_fasta was originally written by Martin Hunt ([email protected])
COPYING
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.