NAME
fastaq_replace_bases
DESCRIPTION
fastaq_replace_bases <fasta/q in> <outfile> <old> <new>
Replaces all occurences of one letter with another in a fasta/q file
positional arguments:
- infile
-
Name of input fasta/q file
- outfile
-
Name of output file
- old
-
Base to be replaced
- new
-
Replace with this letter
optional arguments:
- -h, --help
-
show this help message and exit
AUTHOR
fastaq_replace_bases was originally written by Martin Hunt ([email protected])
COPYING
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.