NAME
fastaq_capillary_to_pairs
DESCRIPTION
fastaq_capillary_to_pairs <infile> <outfiles prefix>
Given a fasta/q file of capillary reads, makes an interleaved file of read pairs (where more than read from same ligation, takes the longest read) and a file of unpaired reads. Replaces the .p1k/.q1k part of read names to denote fwd/rev reads with /1 and /2
positional arguments:
- infile
-
Name of input fasta/q file
- outfiles prefix
-
Prefix of output files
optional arguments:
- -h, --help
-
show this help message and exit
AUTHOR
fastaq_capillary_to_pairs was originally written by Martin Hunt ([email protected])
COPYING
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.