NAME
fastaq_trim_contigs - Trims a set number of bases off the end of every contig
DESCRIPTION
usage: fastaq_trim_contigs [options] <infile> <outfile>
Trims a set number of bases off the end of every contig, so gaps get bigger and contig ends are removed. Bases are replaced with Ns. Any sequence that ends up as all Ns is lost
positional arguments:
- infile
-
Name of input file
- outfile
-
Name of output file
options:
- -h, --help
-
show this help message and exit
- --trim_number TRIM_NUMBER
-
Number of bases to trim around each gap, and off ends of each sequence [100]