NAME
fastaq_to_random_subset - Make a random sample of sequences (and optionally mates as well)
DESCRIPTION
usage: fastaq_to_random_subset [options] <infile> <outfile> <percent>
Takes a random subset of reads from a sequence file and optionally the corresponding read from a mates file. Output is interleaved if mates file given
positional arguments:
- infile
-
Name of input file
- outfile
-
Name of output file
- FLOAT
-
Per cent probability of keeping any given read (pair) in [0,100]
options:
- -h, --help
-
show this help message and exit
- --mate_file MATE_FILE
-
Name of mates file
- --seed INT
-
Seed for random number generator. If not given, python's default is used