NAME
fastaq_to_fasta - Converts a variety of input formats to nicely formatted FASTA format
DESCRIPTION
usage: fastaq_to_fasta [options] <infile> <outfile>
Converts a variety of input formats to nicely formatted FASTA format
positional arguments:
- infile
-
Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip
- outfile
-
Name of output file
options:
- -h, --help
-
show this help message and exit
- -l LINE_LENGTH, --line_length LINE_LENGTH
-
Number of bases on each sequence line of output file. Set to zero for no linebreaks in sequences [60]
- -s, --strip_after_whitespace
-
Remove everything after first whitespace in every sequence name
- -u, --check_unique
-
Die if any of the output sequence names are not unique