NAME
fastaq_search_for_seq - Find all exact matches to a string (and its reverse complement)
DESCRIPTION
usage: fastaq_search_for_seq [options] <infile> <outfile> <search_string>
Searches for an exact match on a given string and its reverse complement, in every sequence of input sequence file. Case insensitive. Guaranteed to find all hits
positional arguments:
- infile
-
Name of input file
- outfile
-
Name of outputfile. Tab-delimited output: sequence name, position, strand
- search_string
-
String to search for in the sequences
options:
- -h, --help
-
show this help message and exit