NAME
fastaq_scaffolds_to_contigs - Creates a file of contigs from a file of scaffolds
DESCRIPTION
usage: fastaq_scaffolds_to_contigs [options] <infile> <outfile>
Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the input
positional arguments:
- infile
-
Name of input file
- outfile
-
Name of output contigs file
options:
- -h, --help
-
show this help message and exit
- --number_contigs
-
Use this to enumerate contig names 1,2,3,... within each scaffold