---
name: "fastaq-get_seq_flanking_gaps"
section: "1"
platform: "linux"
package: "fastaq"
version: "3.17.0-9"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/fastaq-get_seq_flanking_gaps"
---

# fastaq-get\_seq\_flanking\_gaps(1)

Gets the sequences flanking gaps

## NAME

fastaq\_get\_seq\_flanking\_gaps - Gets the sequences flanking gaps

## DESCRIPTION

usage: fastaq\_get\_seq\_flanking\_gaps \[options\] \<infile\> \<outfile\>

Gets the sequences flanking gaps

### positional arguments:

- infile

  Name of input file

- outfile

  Name of output file

### options:

- **-h**, **--help**

  show this help message and exit

- **--left** INT

  Number of bases to get to left of gap \[25\]

- **--right** INT

  Number of bases to get to right of gap \[25\]