NAME
fastaq_caf_to_fastq - Converts a CAF file to FASTQ format
DESCRIPTION
usage: fastaq_caf_to_fastq [options] <infile> <outfile>
Converts CAF file to FASTQ format
positional arguments:
- infile
-
Name of input CAF file.
- outfile
-
Name of output FASTQ file
options:
- -h, --help
-
show this help message and exit
- -c, --clip
-
Use clipping info to clip reads, if present in the input CAF file (as lines of the form "Clipping QUAL start end"). Default is to not clip
- -l INT, --min_length INT
-
Minimum length of sequence to output [1]