---
name: "extractUnmappedSubreads"
section: "1"
platform: "linux"
package: "pbalign"
version: "0.3.2-1"
release: "Debian 10 (Buster)"
platforms: ["linux"]
url: "https://new.carta.tech/extractUnmappedSubreads"
---

# extractUnmappedSubreads(1)

Extract unmapped subreads from a fasta file

## NAME

extractUnmappedSubreads - Extract unmapped subreads from a fasta file

## DESCRIPTION

usage: extractUnmappedSubreads \[-h\] \[--verbose\] \[--version\] \[--profile\]

- \[--debug\]

  fasta cmp.h5 \[cmp.h5 ...\]

Extract unmapped subreads from a fasta file.

### positional arguments:

- fasta

  a fasta file containing all subreads.

- cmp.h5

  input cmp.h5 files.

### optional arguments:

- **-h**, **--help**

  show this help message and exit

- **--verbose**, **-v**

  Set the verbosity level (default: None)

- **--version**

  show program's version number and exit

- **--profile**

  Print runtime profile at exit (default: False)

- **--debug**

  Catch exceptions in debugger (requires ipdb) (default: False)

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.