NAME
extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file
SYNOPSIS
extractTranscriptInfo.py [options] <inputFile> <outputFile>
DESCRIPTION
-
This program extracts information about transcripts from reference Fasta file. This is partially replaced by using SAM header, which however does not include information about transcript-gene grouping. Current version of parseAlignment extracts this information from a reference sequence file (making this script obsolete).
OPTIONS
- -h, --help
-
show this help message and exit
- -v, --verbose
-
Verbose output
- -t TYPE, --type=TYPE
-
Type of file to parse: ensembl, cuff, other