extractBCITrees1
Part of mauvealigner package reads all trees and their posterior from a set of mrbayes .trprobs files
Usage
extractBCITrees <random
seed>
<BCI
threshold>
<max
output
trees>
<MrBayes
.trprobs
input
file
1
..
N>
<nexus
output
file>
Overview
This program reads all trees and their posterior from a set of MrBayes .trprobs files and sums and normalizes posteriors for each topology. All trees that meet a Bayes Credible Interval threshold will be saved, up to some maximum number of trees. <BCI Threshold> A number between 0 and 1 giving the BCI threshold. 0.9 is a good choice. <max output trees> Limit the output to this many trees. All trees in the input file must have the same number of taxa and the same taxon labels