---
name: "einverted"
section: "1e"
platform: "linux"
package: "emboss"
version: "6.6.0+dfsg-15"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/einverted"
---

# einverted(1e)

Finds inverted repeats in nucleotide sequences

## NAME

einverted - Finds inverted repeats in nucleotide sequences

## SYNOPSIS

**einverted** **-sequence** *seqall* **-gap** *integer* **-threshold** *integer* **-match** *integer* **-mismatch** *integer* \[**-maxrepeat** *integer*\] **-outfile** *outfile* **-outseq** *seqout*

**einverted** **-help**

## DESCRIPTION

**einverted** is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Nucleic:Repeats,Nucleic:2D structure" command group(s).

## OPTIONS

### Input section

- **-sequence** *seqall*

  ### Required section

- **-gap** *integer*

  Default value: 12

- **-threshold** *integer*

  Default value: 50

- **-match** *integer*

  Default value: 3

- **-mismatch** *integer*

  Default value: -4

### Additional section

- **-maxrepeat** *integer*

  Maximum separation between the start of repeat and the end of the inverted repeat. Default value: 2000

### Output section

- **-outfile** *outfile*

  - **-outseq** *seqout*

  The sequence of the inverted repeat regions without gap characters.

## BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group\_id=93650&atid=605031).

## SEE ALSO

einverted is fully documented via the **tfm**(1) system.

## AUTHOR

**Debian Med Packaging Team** \<debian-med-packaging@lists.alioth.debian.org\>

Wrote the script used to autogenerate this manual page.

## COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.