---
name: "ecogrep"
section: "1"
platform: "linux"
package: "ecopcr"
version: "1.0.1+dfsg-5"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/ecogrep"
---

# ecogrep(1)

filtering ecoPCR result based on taxonomic id filter and regular expression pattern

## NAME

ecogrep - filtering ecoPCR result based on taxonomic id filter and regular expression pattern

## SYNOPSIS

**ecogrep** **\[options\]** *filename*

## DESCRIPTION

ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality.

This program belongs to the exoPCR package.

## OPTIONS

- **-1** : \[FIRST\] : compare the given pattern with direct strand oligonucleotide

  - **-2**

  : \[SECOND\] : compare the given pattern with reverse strand oligonucleotide

- **-d**

  : \[D\]atabase containing taxonomic information

- **-e**

  : \[E\]rrors : max error allowed in pattern match (option-1, **-2** and **-p**) (0 by default)

- **-p**

  : \[P\]attern : oligonucleotide pattern

- **-h**

  : \[H\]elp : print \<this\> help

- **-i**

  : \[I\]gnore subtree under given taxonomic id

- **-r**

  : \[R\]estrict search to subtree under given taxomic id

- **-v**

  : in\[V\]ert the sense of matching, to select non-matching lines.

- argument:

  ecoPCR output file name

## SEE ALSO

http://www.grenoble.prabi.fr/trac/ecoPCR/