NAME
ecogrep - filtering ecoPCR result based on taxonomic id filter and regular expression pattern
SYNOPSIS
ecogrep [options] filename
DESCRIPTION
ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality.
This program belongs to the exoPCR package.
OPTIONS
- -1 : [FIRST] : compare the given pattern with direct strand oligonucleotide
- -2
-
: [SECOND] : compare the given pattern with reverse strand oligonucleotide
- -d
-
: [D]atabase containing taxonomic information
- -e
-
: [E]rrors : max error allowed in pattern match (option-1, -2 and -p) (0 by default)
- -p
-
: [P]attern : oligonucleotide pattern
- -h
-
: [H]elp : print <this> help
- -i
-
: [I]gnore subtree under given taxonomic id
- -r
-
: [R]estrict search to subtree under given taxomic id
- -v
-
: in[V]ert the sense of matching, to select non-matching lines.
- argument:
-
ecoPCR output file name
SEE ALSO
http://www.grenoble.prabi.fr/trac/ecoPCR/