NAME
draw-tree - Draw NEWICK (and some other) formatted files.
SYNOPSIS
draw-tree [OPTIONS] tree file
DESCRIPTION
Draw NEWICK (and some other) formatted files.
INPUT OPTIONS:
- -h, –help
-
Produce help message
- -W arg (=8.5), –width arg (=8.5)
-
Page width in inches
- -H arg (=11), –height arg (=11)
-
Page height in inches
- –file arg
-
predicates to examine
- –output arg (=pdf)
-
Type of output to write: tree, topology, mtree, lengths, dot, ps, pdf, svg
- –out arg
-
Output filename (without extension)
- –full
-
Consider only full splits by collapsing any partial splits.
- –iterations arg (=2)
-
Number of iterations for layout algorithm
- –font-size arg (=10)
-
Font size for taxon names
- –angle_iterations arg (=0)
-
Number of iterations for layout algorithm with small-angle penalties
- –labels arg (=horizontal)
-
Are the names horizontal or angled?
- –collapse
-
Give node lengths evenly to neighboring branches and zero the node lengths.
- –layout arg (=graph)
-
Layout method: graph, equal-angle, equal-daylight, etc.
- –greedy
-
For equal-daylight layout: take as much daylight as possible?
- –tree-layout-initial
-
Start an energy layout with positions from the equal-angle layout - only for multifurcating trees
- –no-shade
-
For equal-daylight layout: reject rotations that shade other groups?
- –draw-clouds arg
-
Draw wandering-ranges in MC trees as clouds.
- –seed arg
-
Random seed
- –verbose
-
Output more log messages on stderr.
REPORTING BUGS:
BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .
Please send bug reports to ⟨[email protected]⟩\c .
AUTHORS
Benjamin Redelings.