---
name: "domainsse"
section: "1"
platform: "linux"
package: "embassy-domainatrix"
version: "0.1.0-1"
release: "Debian 5.0 (Lenny)"
platforms: ["linux"]
url: "https://new.carta.tech/domainsse"
---

# domainsse(1)

Add secondary structure records to a DCF file.

## NAME

domainsse - Add secondary structure records to a DCF file.

## SYNOPSIS

**domainsse** **-dcfinfile** *infile* **-dccfdir** *directory* **-dcfoutfile** *outfile* **-logfile** *outfile*

**domainsse** **-help**

## DESCRIPTION

**domainsse** is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database creation" command group(s).

## OPTIONS

### Input section

- **-dcfinfile** *infile*

  This option specifies the name of the DCF file (domain classification file) (input). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS.

- **-dccfdir** *directory*

  This option specifies the location of the domain CCF file (clean coordinate files) (input). A ´clean cordinate file´ contains protein coordinate and derived data for a single PDB file (´protein clean coordinate file´) or a single domain from SCOP or CATH (´domain clean coordinate file´), in CCF format (EMBL-like). The files, generated by using PDBPARSE (PDB files) or DOMAINER (domains), contain ´cleaned-up´ data that is self-consistent and error-corrected. Records for residue solvent accessibility and secondary structure are added to the file by using PDBPLUS. Default value: ./

### Required section

### Advanced section

### Output section

- **-dcfoutfile** *outfile*

  This option specifies the name of the DCF file (domain classification file) with secondary structure records (output). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS.

- **-logfile** *outfile*

  This option specifies the name of the DOMAINSSE log file. Default value: domainsse.log

## BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group\_id=93650&atid=605031).

## SEE ALSO

domainsse is fully documented via the **tfm**(1) system.

## AUTHOR

**Debian EMBOSS Packaging Team** \<pkg-emboss-devel@lists.alioth.debian.org\>

-

  Wrote the script used to autogenerate this manual page.

## COPYRIGHT

Copyright © 2007 Debian EMBOSS Packaging Team\

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.