---
name: "domainrep"
section: "1"
platform: "linux"
package: "embassy-domalign"
version: "0.1.0-1"
release: "Debian 5.0 (Lenny)"
platforms: ["linux"]
url: "https://new.carta.tech/domainrep"
---

# domainrep(1)

Reorder DCF file to identify representative structures.

## NAME

domainrep - Reorder DCF file to identify representative structures.

## SYNOPSIS

**domainrep** **-dcfinfile** *infile* **-node** *list* **-dcfoutfile** *outfile*

**domainrep** **-help**

## DESCRIPTION

**domainrep** is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:3D Structure" command group(s).

## OPTIONS

### Input section

- **-dcfinfile** *infile*

  This option specifies the name of DCF file (domain classification file) (input). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS.

### Required section

- **-node** *list*

  This option specifies the node fore reordering the file. Reordering can be done for any specified node in the SCOP or CATH hierarchies. For example by selecting ´Class´ entries belonging to the same Class will be reordered in turn. Default value: 1

### Output section

- **-dcfoutfile** *outfile*

  This option specifies the name of DCF file (domain classification file) (output). A ´domain classification file´ contains classification and other data for domains from SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence information can be added to the file by using DOMAINSEQS. Default value: test.scop

## BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group\_id=93650&atid=605031).

## SEE ALSO

domainrep is fully documented via the **tfm**(1) system.

## AUTHOR

**Debian EMBOSS Packaging Team** \<pkg-emboss-devel@lists.alioth.debian.org\>

-

  Wrote the script used to autogenerate this manual page.

## COPYRIGHT

Copyright © 2007 Debian EMBOSS Packaging Team\

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.