---
name: "demoalign"
section: "1e"
platform: "linux"
package: "emboss"
version: "6.1.0-5"
release: "Debian 6.0 (Squeeze)"
platforms: ["linux"]
url: "https://new.carta.tech/demoalign"
---

# demoalign(1e)

Reads a sequence set, writes an alignment file

## NAME

demoalign - Reads a sequence set, writes an alignment file

## SYNOPSIS

**demoalign** **-sequence** *seqset* \[**-floatmatrix** *matrixf*\] \[**-intmatrix** *matrix*\] **-dofloat** *boolean* **-outfile** *align*

**demoalign** **-help**

## DESCRIPTION

**demoalign** is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Test" command group(s).

## OPTIONS

### Input section

- **-sequence** *seqset*

  - **-floatmatrix** *matrixf*

  This is the scoring matrix file used when comparing sequences. By default it is the file ´EBLOSUM62´ (for proteins) or the file ´EDNAFULL´ (for nucleic sequences). These files are found in the ´data´ directory of the EMBOSS installation.

- **-intmatrix** *matrix*

  This is the scoring matrix file used when comparing sequences. By default it is the file ´EBLOSUM62´ (for proteins) or the file ´EDNAFULL´ (for nucleic sequences). These files are found in the ´data´ directory of the EMBOSS installation.

### Advanced section

- **-dofloat** *boolean*

  ### Output section

- **-outfile** *align*

  ## BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group\_id=93650&atid=605031).

## SEE ALSO

demoalign is fully documented via the **tfm**(1) system.

## AUTHOR

**Debian-Med Packaging Team** \<debian-med-packaging@lists.alioth.debian.org\>

Wrote the script used to autogenerate this manual page.

## COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.