NAME
demoalign - Reads a sequence set, writes an alignment file
SYNOPSIS
demoalign -sequence seqset [-floatmatrix matrixf] [-intmatrix matrix] -dofloat boolean -outfile align
demoalign -help
DESCRIPTION
demoalign is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Test" command group(s).
OPTIONS
Input section
- -sequence seqset
- -floatmatrix matrixf
-
This is the scoring matrix file used when comparing sequences. By default it is the file ´EBLOSUM62´ (for proteins) or the file ´EDNAFULL´ (for nucleic sequences). These files are found in the ´data´ directory of the EMBOSS installation.
- -intmatrix matrix
-
This is the scoring matrix file used when comparing sequences. By default it is the file ´EBLOSUM62´ (for proteins) or the file ´EDNAFULL´ (for nucleic sequences). These files are found in the ´data´ directory of the EMBOSS installation.
Advanced section
- -dofloat boolean
Output section
- -outfile align
BUGS
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO
demoalign is fully documented via the tfm(1) system.
AUTHOR
Debian-Med Packaging Team <[email protected]>
Wrote the script used to autogenerate this manual page.
COPYRIGHT
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.