---
name: "csv2mipe"
section: "1"
platform: "linux"
package: "mipe"
version: "1.1-9"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/csv2mipe"
---

# csv2mipe(1)

Generates MIPE file based on 3 tab-delimited files based on MIPE version v1.1 arguments: \* tab-delimited file with PCR-level data \* tab-delimited file with SNP-level data \* tab-delimited file with assay-level data

## NAME

csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files\
   based on MIPE version v1.1\
   arguments: \* tab-delimited file with PCR-level data\
              \* tab-delimited file with SNP-level data\
              \* tab-delimited file with assay-level data

```
  Columns in file with PCR-level data:
    pcr_id
    pcr_modified (might be multiple, divided by semi-colon ";")
    pcr_project (might be multiple, divided by semi-colon ";")
    pcr_researcher (might be multiple, divided by semi-colon ";")
    pcr_species
    source_type
    source_id
    design_seq
    primer1_oligo
    primer1_seq
    primer1_tm
    primer2_oligo
    primer2_seq
    primer2_tm
    design_remark (might be multiple, divided by semi-colon ";")
    use_seq
    use_revcomp
    use_remark (might be multiple, divided by semi-colon ";")
    pcr_remark (might be multiple, divided by semi-colon ";")
  Columns in file with SNP-level data:
    pcr_id
    snp_id
    snp_pos
    snp_amb
    snp_remark (might be multiple, divided by semi-colon ";")
  Columns in file with assay-level data:
    pcr_id
    snp_id
    assay_id
    assay_type
    assay_enzyme
    assay_oligo
    assay_specific
    assay_tail
    assay_strand
    assay_remark (might be multiple, divided by semi-colon ";")
```

## SYNOPSIS

csv2mipe.pl \<pcr\_file.csv\> \<snp\_file.csv\> \<assay\_file.csv\>

## ADDITIONAL INFO

See http://mipe.sourceforge.net

## AUTHOR

Jan Aerts (jan.aerts@bbsrc.ac.uk)